You can use the excellent online services to retrieve the information instead of typing all the information yourself. Always wanted to manage all your collections in one product? You want a product you can customize to your needs? Your search ends here! Using Data Crow allows you to create a huge database containing all your collected items. login) are discouraged, but this an appropriate use case for modifying those files.Data Crow 3.4.9 Beta / 3.4.8 Description:ĭata Crow represents he ultimate cataloger. Usually modifications to the login files (.tcsh. To make the modules available upon logging in, without having to specify the full path or doing module use, add the following to the ~/.tcsh or ~/.bashrc file: Set the modules path to be available on login Module use -append /usr/local/usrapps/bioinfo/modulefiles Module load /usr/local/usrapps/bioinfo/modulefiles/spades/3.14.0 The module for SPAdes may be called from the command line or from an LSF batch script by doing In case there are or will be other versions of SPAdes installed, set 3.14.0 as default by creating a file /usr/local/usrapps/bioinfo/modulefiles/spades/.version containing The version number was 3.14.0.įrom the directory /usr/local/usrapps/bioinfo/modulefiles/spades, create a text file called 3.14.0 containing SPAdes was downloaded as a binary executable rather than being compiled therefore, the naming convention is appname/. Mkdir /usr/local/usrapps/bioinfo/modulefilesĬd /usr/local/usrapps/bioinfo/modulefiles To create the module, first create the modulefiles and appname directories: This results in a directory called SPAdes-3.14.0-Linux, containing the directories The following was done to install SPAdes: (Only members of bioinfo can access this module.) This was done to install and create a module for SPAdes in the software group bioinfo. Here is a full example of creating a module. Module use -append /usr/local/usrapps/$GROUP/modulefilesĪfter doing module use -append, the custom modules should be visible when typing module avail, and then modules may be loaded as usual: (Do not add a slash '/' after modulefiles.) Module load /usr/local/usrapps/$GROUP/modulefiles/appname/-Īlternatively, the path to the modulefiles can be added by doing the following. To load the module, the whole path may be specified usr/local/usrapps/$GROUP/modulefiles/appname/ The default module can be set by creating a text file called. To see examples of how to define the environment variables, see the contents of various staff created modules here:įor an example of a more complex module file, see one of the Intel modules, e.g., The staff naming convention for modules is generallyĪppname/-įollowed by definitions for the environment variables. In the directory appname, create a text file appropriately named to indicate version number and, if applicable, the compiler version. Mkdir /usr/local/usrapps/$GROUP/modulefiles/appname In the modulefiles directory, make a directory for each software, e.g., Mkdir /usr/local/usrapps/$GROUP/modulefiles Here is the general procedure to create a module for user maintained software. Users may also create their own custom modules. Typing module avail shows the modules installed by staff that are available system wide. The preferred method of setting the environment is to use the module load command. After installing an application, variables such as PATH and LD_LIBRARY_PATH must be set in order to call the application from any directory.
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